7 ECTS credits
175 h study time

Offer 1 with catalog number 4004046FNR for all students in the 1st and 2nd semester at a (F) Master - specialised level.

Semester
1st and 2nd semester
Enrollment based on exam contract
Impossible
Grading method
Grading (scale from 0 to 20)
Can retake in second session
Yes
Enrollment Requirements
Alvorens men kan inschrijven voor "Industriële microbiologie" dient men geslaagd te zijn voor "Microbiologie", "Wiskundige en fysische modellen", "Warmte- en stromingsleer" (basisbegrippen en modelleren) en "Mechanische en thermische bewerkingen" en ingeschreven of geslaagd te zijn voor "Biochemische ingenieurstechnieken" en "Geïntegreerd practicum industriële biotechnologie".
Taught in
Dutch
Faculty
Faculty of Sciences and Bioengineering Sciences
Department
Bio-Engineering Sciences
Educational team
Luc De Vuyst (course titular)
Activities and contact hours

39 contact hours Lecture
39 contact hours Seminar, Exercises or Practicals
Course Content

Theory (39 h HOC):

- cell cultivation techniques and upstream processing:
fundamental aspects of microbial, animal and plant cell cultivation
nutritional requirements of cell cultivation (cel nutrients, culture media and medium formulation)
cultivation of microbial cells (preparation of culture media, sterilisation of culture media, inoculum buildup)
- microbial cells - sources, physiological control and strain improvement:

source and maintenance of microorganisms

screening for microorganisms (screening methods)
biocatalyst development (physiological control, strain improvement by mutation and selection, genetic recombination, omics)
- microbial kinetics:
vegetative growth of unicellular microorganisms, namely bacteria, yeasts and filamentous fungi (quantification of growth, specific growth parameters, stoechiometry)
process engineering (physical and chemical control of the microbial cell environment with emphasis on temperature, degree of acidity, dissolved oxygen concentration and heat generation)
model development for microbial kinetics (equation of Monod, exponential growth and sigmoidal batch growth curve, cubic pellet growth and diffusion limitations, linear law of substrate consumption, equation of Luedeking-Piret, enzyme production)
- analysis and design of fermentors:
construction and function of a fermentor
classification of fermentors based on the cultivation principle (batch, continuous culture with emphasis on chemostat, chemostat with cell recirculation, series of chemostats, fed-batch; homogenous and heterogenous reactors with emphasis on the solid state fermentation process; tank, column and tower or loop fermentors)
classification of fermentors based on the aeration system (surface culture and submerged culture, static and dynamic aerators)
classification of fermentors based on the agitation system (survey)
- applications of industrial fermentation processes:
production of biomass (bakers yeast, starter cultures and food supplements, soil and seed inocula, single cell protein and single cell oil, vaccines)
production of primary metablites: alcohols, solvents, organic acids, amino acids, vitamins, coenzymes and pigments, nucleotides and derivatives.

Theoretical problems (9 h WPO) and computer probems (12 h WPO):
- data analysis (linear and non-linear regression) and interactive simulation (PC, Excel);
- stoechiometry of microbial growth and product formation;
- microbial kinetics;
- determination of the biokinetic parameters mumax, Ks, Y'x/s and ms;
- kinetics of batch, chemostat and fed-batch fermentation processes.

Excursions (18 h WPO):
During two full days, excursions companies active in industrial fermentations are visited: enzyme production, bakers yeast production, and citric acid production.

Course material
Course text (Required) : Industriële microbiologie, Syllabus, L. De Vuyst
Handbook (Recommended) : Principles of Fermentation Technology, P.F. Stanbury, A. Whitaker and S.J. Hall, Beschikbaar in VUB-bibliotheek, 9780080999531
Handbook (Recommended) : Industrial Microbiology, M.J. Waits, N.L. Morgan, J.S. Rocky and G. Higton, Beschikbaar in VUB-bibliotheek, 9780632053070
Digital course material (Required) : Industriële microbiologie, Power point presentatie beschikbaar, L. De Vuyst, Canvas
Handbook (Recommended) : Brock Biology of Microorganisms, M.T. Madigan, J.M. Martinko & J. Parker, 14de, Beschikbaar in VUB-bibliotheek, 9781292018317, 2015
Handbook (Recommended) : Biotechnology, A Textbook of Industrial Microbiology, Wulf Crueger and Anneliese Crueger, Beschikbaar in VUB-bibliotheek, 9789385998638, 2017
Handbook (Recommended) : Bioprocess Engineering Principles, Pauline M. Doran, Beschikbaar in VUB-bibliotheek, 9780122208515
Handbook (Recommended) : Bioprocess Engineering Basic Concepts, Michael L. Shuler & Fikret Kargi, Beschikbaar in VUB-bibliotheek, 9780137062706
Handbook (Recommended) : Biochemical Engineering, James M. Lee, Beschikbaar in VUB-bibliotheek, 9780130853172, 1991
Handbook (Recommended) : Fermentation Microbiology and Biotechnology, E.M.T. El-Mansi and C.F.A. Bryce, Beschikbaar in VUB-bibliotheek, 9781439855799, 2011
Handbook (Recommended) : Basic Biotechnology, C. Ratledge and B. Kristiansen, Beschikbaar in VUB-bibliotheek, 9780521549585, 2006
Additional info

Theoretical and computer problem solving, practicals and excursions are mandatory.

Learning Outcomes

General competencies

- To know, to understand and to apply the basic principles of strain improvement, biochemical deregulation of metabolic pathways and fermentation techniques
- To derive formulas concerning the kinetics of microbial growth, product formation and cultivation principles (batch, continuous culture, fed-batch) and to use them to solve simple problems
- To use the studied basic principles, kinetics and cultivation principles to analyse industrial fermentation processes (biomass production, production of primary metabolites, production of secondary metabolites, enzyme production, production of recombinant proteins)
- To use the principles concerning microbial physiology on the one hand and fermentation techniques on the other hand to develop appropriate fermentation strategies with a high productivity for a given microbial strain and/or metabolite.

Grading

The final grade is composed based on the following categories:
Oral Exam determines 60% of the final mark.
Written Exam determines 40% of the final mark.

Within the Oral Exam category, the following assignments need to be completed:

  • mondeling examen with a relative weight of 1 which comprises 60% of the final mark.

    Note: Mondeling examen over het kennen en begrijpen van de basisprincipes van stamverbetering en biochemische deregulatie van metabolische pathways, toegepast op gegeven (industriële) fermentatieprocessen (1 vraag), microbiële kinetiek en fermentatietechnieken (1 vraag), fysiologie en technologie van de belangrijkste industriële micro-organismen (1 vraag).

Within the Written Exam category, the following assignments need to be completed:

  • schriftelijk examen with a relative weight of 1 which comprises 40% of the final mark.

    Note: Schriftelijk examen (gesloten boek) over het toepassen van de microbiële kinetiek (1 oefening) en fermentatietechnieken (1 oefening) om eenvoudige problemen wiskundig op te lossen (gebruik van computer).

Additional info regarding evaluation

Oral examination to test the student's knowledge and analysis of basic principles of strain improvement and biochemical deregulation of metabolic pathways for known industrial fermentation processes; microbial kinetics and fermentation techniques; terminology.

Written examination to apply microbial kinetics and fermentation techniques to solve simple mathematical problems (computer use).

Points: written 8 and oral 12 out of a total of 20 points.

Names of microorganisms, enzymes and chemical formules need to be known. If this is not the case, the student can not pass.

Allowed unsatisfactory mark
The supplementary Teaching and Examination Regulations of your faculty stipulate whether an allowed unsatisfactory mark for this programme unit is permitted.

Academic context

This offer is part of the following study plans:
Master of Bioengineering Sciences: Cell and Gene Biotechnology: Medical Biotechnology (only offered in Dutch)
Master of Bioengineering Sciences: Cell and Gene Biotechnology: Molecular Biotechnology (only offered in Dutch)
Master of Bioengineering Sciences: Cell and Gene Biotechnology: Agrobiotechnology (only offered in Dutch)
Master of Bioengineering Sciences: Chemistry and Bioprocess Technology: Food Biotechnology (only offered in Dutch)
Master of Bioengineering Sciences: Chemistry and Bioprocess Technology: Chemical Biotechnology (only offered in Dutch)
Master of Bioengineering Sciences: Chemistry and Bioprocess Technology: Biochemical Biotechnology (only offered in Dutch)